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In small bowl, combine flaxseed meal and water. Mix and set aside for 5 minutes.
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Combine flour, baking soda, baking powder, sugar, ginger, cinnamon, nutmeg, cloves, white pepper and salt in a large bowl. Whisk to combine and remove lumps.
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Add flax mixture, molasses, oil, milk and vanilla to the flour mixture. Stir to combine.
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Preheat oven to 350 degrees F. Line baking sheet with parchment paper. Scoop 1 tablespoon of batter onto the sheet, spacing cookies 2 inches apart.
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Bake 5–10 minutes, rotating pan after 5 minutes. Cookies should puff up and set. Insert a toothpick to check doneness. Cool cookies on wire rack.
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In medium bowl, combine softened cream cheese and butter. Mix with a spatula until smooth. Add powdered sugar and mix well.
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Microwave chocolate chips in 30-second intervals, stirring to melt. Add melted chocolate and vanilla to the cream cheese mixture and stir until combined.
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Spread filling on the bottom of half the cookies. Top with remaining cookies.
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Chill for 30 minutes. Dust with powdered sugar before serving.